Browse entries in the PDBbind-CN Database

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Related entries of code: 6bed
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6bebRCSB PDB    PDBbind576aa, >6BEB_1|Chains... *
6becRCSB PDB    PDBbind576aa, >6BEC_1|Chains... at 99%
6beeRCSB PDB    PDBbind553aa, >6BEE_1|Chains... at 99%
6befRCSB PDB    PDBbind553aa, >6BEF_1|Chains... at 99%
6behRCSB PDB    PDBbind553aa, >6BEH_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1i6vRCSB PDB    PDBbindRFP
2hw2RCSB PDB    PDBbindRFP
4kmuRCSB PDB    PDBbindRFP
5hv1RCSB PDB    PDBbindRFP
5uacRCSB PDB    PDBbindRFP
5uahRCSB PDB    PDBbindRFP
5ualRCSB PDB    PDBbindRFP
Entry Information
PDB ID6bed
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameScaffold protein D13
Ligand NameRFP
EC.Number E.C.-.-.-.-
Resolution 2.75(Å)
Affinity (Kd/Ki/IC50)Kd=19uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Proc. Natl. Acad. Sci. U.S.A. Vol. 115: pp. 8424-8429
Ligand Properties
Formula C43H59N4O12
Molecular Weight 823.948
Exact Mass 823.413
No. of atoms 118
No. of bonds 122
Polar Surface Area 221.35
LOGP Value 5.46      (Computed with XLOGP3)
4.56      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P68440  
Entrez Gene IDNCBI Entrez Gene ID: 3707516  
ASDInformation of known allosteric effects of PDB entries
 
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