Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6bmi
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2nwlRCSB PDB    PDBbind422aa, >2NWL_1|Chains... *
2nwwRCSB PDB    PDBbind422aa, >2NWW_1|Chains... at 99%
4izmRCSB PDB    PDBbind421aa, >4IZM_1|Chains... at 99%
4x2sRCSB PDB    PDBbind422aa, >4X2S_1|Chains... at 99%
6bauRCSB PDB    PDBbind420aa, >6BAU_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3atpRCSB PDB    PDBbindSER
3q1xRCSB PDB    PDBbindSER
4b2dRCSB PDB    PDBbindSER
4io4RCSB PDB    PDBbindSER
5aveRCSB PDB    PDBbindSER
6iouRCSB PDB    PDBbindSER
Entry Information
PDB ID6bmi
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGltPh
Ligand NameSER
EC.Number E.C.-.-.-.-
Resolution 3.9(Å)
Affinity (Kd/Ki/IC50)Kd=9uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat Commun Vol. 9: pp. 38-38
Ligand Properties
Formula C3H8NO3
Molecular Weight 106.101
Exact Mass 106.050
No. of atoms 15
No. of bonds 14
Polar Surface Area 85.17
LOGP Value -3.17      (Computed with XLOGP3)
-2.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O59010  
Entrez Gene IDNCBI Entrez Gene ID: 1443616  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com