Browse entries in the PDBbind-CN Database

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Related entries of code: 6df4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5i1qRCSB PDB    PDBbind144aa, >5I1Q_1|Chain... at 100%
5i29RCSB PDB    PDBbind144aa, >5I29_1|Chain... at 100%
5mg2RCSB PDB    PDBbind137aa, >5MG2_1|Chain... at 98%
6df7RCSB PDB    PDBbind167aa, >6DF7_1|Chains... at 100%
6bqdRCSB PDB    PDBbind130aa, >6BQD_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6df4
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTranscription initiation factor TFIID subunit
Ligand NameG9Y
EC.Number E.C.-.-.-.-
Resolution 1.3(Å)
Affinity (Kd/Ki/IC50)IC50=0.023uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Med. Chem. Vol. 61: pp. 9301-9315
Ligand Properties
Formula C22H23N3O3
Molecular Weight 377.436
Exact Mass 377.174
No. of atoms 51
No. of bonds 54
Polar Surface Area 67.33
LOGP Value 2.01      (Computed with XLOGP3)
2.98      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): U3KMH2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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