Browse entries in the PDBbind-CN Database

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Related entries of code: 6dzy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6dzvRCSB PDB    PDBbind110aa, >6DZV_3|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6dzvRCSB PDB    PDBbindHJM
Entry Information
PDB ID6dzy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSodium-dependent serotonin transporter
Ligand NameHJM
EC.Number E.C.-.-.-.-
Resolution 4.1(Å)
Affinity (Kd/Ki/IC50)Ki=3uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Nature Vol. 569: pp. 141-145
Ligand Properties
Formula C20H27N2O
Molecular Weight 311.441
Exact Mass 311.212
No. of atoms 50
No. of bonds 54
Polar Surface Area 29.46
LOGP Value 3.92      (Computed with XLOGP3)
4.09      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P31645  
Entrez Gene IDNCBI Entrez Gene ID: 6532  
ASDInformation of known allosteric effects of PDB entries
 
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