Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6edr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2pgjRCSB PDB    PDBbind262aa, >2PGJ_1|Chains... *
2pglRCSB PDB    PDBbind262aa, >2PGL_1|Chains... at 99%
3u4hRCSB PDB    PDBbind262aa, >3U4H_1|Chains... at 100%
3u4iRCSB PDB    PDBbind262aa, >3U4I_1|Chains... at 100%
4tmfRCSB PDB    PDBbind257aa, >4TMF_1|Chains... at 99%
4xjsRCSB PDB    PDBbind262aa, >4XJS_1|Chain... at 96%
4xjtRCSB PDB    PDBbind262aa, >4XJT_1|Chain... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6edr
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehuman CD38
Ligand NameZNA
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Ki=28.5uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Chem Sci Vol. 9: pp. 8337-8342
Ligand Properties
Formula C21H31N7O13P2S
Molecular Weight 683.522
Exact Mass 683.118
No. of atoms 75
No. of bonds 79
Polar Surface Area 367.19
LOGP Value -5.21      (Computed with XLOGP3)
-1.97      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 20
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P28907  
Entrez Gene IDNCBI Entrez Gene ID: 952  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com