Browse entries in the PDBbind-CN Database

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Related entries of code: 6epz
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6epyRCSB PDB    PDBbind683aa, >6EPY_1|Chains... *
6eq1RCSB PDB    PDBbind683aa, >6EQ1_1|Chains... at 100%
6eq8RCSB PDB    PDBbind683aa, >6EQ8_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3altRCSB PDB    PDBbindMLB

Entry Information
PDB ID6epz
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePeriplasmic alpha-galactoside-binding protein
Ligand NameMLB
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=0.072uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. 293: pp. 7930-7941
Ligand Properties
Formula C12H22O11
Molecular Weight 342.296
Exact Mass 342.116
No. of atoms 45
No. of bonds 46
Polar Surface Area 189.53
LOGP Value -4.73      (Computed with XLOGP3)
-5.40      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A083ZM57  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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