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Related entries of code: 6f4n
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2xzwRCSB PDB    PDBbindAKG
3hwwRCSB PDB    PDBbindAKG
3oujRCSB PDB    PDBbindAKG
4nroRCSB PDB    PDBbindAKG
4octRCSB PDB    PDBbindAKG
4qkdRCSB PDB    PDBbindAKG
4usiRCSB PDB    PDBbindAKG
4y5sRCSB PDB    PDBbindAKG
5c3pRCSB PDB    PDBbindAKG
5c5tRCSB PDB    PDBbindAKG
5hv0RCSB PDB    PDBbindAKG
6gdyRCSB PDB    PDBbindAKG
Entry Information
PDB ID6f4n
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameJMJD5
Ligand NameAKG
EC.Number E.C.-.-.-.-
Resolution 2.54(Å)
Affinity (Kd/Ki/IC50)IC50=6uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat Commun Vol. 9: pp. 1-12
Ligand Properties
Formula C5H6O5
Molecular Weight 146.098
Exact Mass 146.022
No. of atoms 16
No. of bonds 15
Polar Surface Area 91.67
LOGP Value 1.43      (Computed with XLOGP3)
-0.50      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8N371  
Entrez Gene IDNCBI Entrez Gene ID: 79831  
ASDInformation of known allosteric effects of PDB entries
 
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