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Related entries of code: 6fgc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4u90RCSB PDB    PDBbind419aa, >4U90_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6fgc
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGephyrin
Ligand NameD95
EC.Number E.C.2.7.7.75;2.10.1.1
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Kd=3.3uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Neuron Vol. 101: pp. 673-689.e11
Ligand Properties
Formula C19H28O8
Molecular Weight 384.421
Exact Mass 384.178
No. of atoms 55
No. of bonds 58
Polar Surface Area 100.52
LOGP Value 3.96      (Computed with XLOGP3)
2.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q03555  
Entrez Gene IDNCBI Entrez Gene ID: 64845  
ASDInformation of known allosteric effects of PDB entries
 
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