Browse entries in the PDBbind-CN Database

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Related entries of code: 6gmq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3zrcRCSB PDB    PDBbind97aa, >3ZRC_2|Chains... *
3ztcRCSB PDB    PDBbind97aa, >3ZTC_2|Chains... at 100%
3ztdRCSB PDB    PDBbind97aa, >3ZTD_2|Chains... at 100%
4awjRCSB PDB    PDBbind97aa, >4AWJ_2|Chains... at 100%
4b95RCSB PDB    PDBbind97aa, >4B95_2|Chains... at 100%
4b9kRCSB PDB    PDBbind97aa, >4B9K_4|Chain... at 100%
4bksRCSB PDB    PDBbind97aa, >4BKS_2|Chains... at 100%
4bktRCSB PDB    PDBbind97aa, >4BKT_2|Chains... at 100%
4jghRCSB PDB    PDBbind96aa, >4JGH_3|Chain... at 98%
4w9cRCSB PDB    PDBbind97aa, >4W9C_2|Chains... at 100%
4w9dRCSB PDB    PDBbind97aa, >4W9D_2|Chains... at 100%
4w9eRCSB PDB    PDBbind97aa, >4W9E_2|Chains... at 100%
4w9fRCSB PDB    PDBbind97aa, >4W9F_2|Chains... at 100%
4w9gRCSB PDB    PDBbind97aa, >4W9G_2|Chains... at 100%
4w9hRCSB PDB    PDBbind97aa, >4W9H_2|Chains... at 100%
4w9iRCSB PDB    PDBbind97aa, >4W9I_2|Chains... at 100%
4w9jRCSB PDB    PDBbind97aa, >4W9J_2|Chains... at 100%
4w9kRCSB PDB    PDBbind97aa, >4W9K_2|Chains... at 100%
4w9lRCSB PDB    PDBbind97aa, >4W9L_2|Chains... at 100%
5lliRCSB PDB    PDBbind97aa, >5LLI_2|Chains... at 100%
5n4wRCSB PDB    PDBbind97aa, >5N4W_5|Chain... at 100%
5nvvRCSB PDB    PDBbind97aa, >5NVV_2|Chains... at 100%
5nvwRCSB PDB    PDBbind97aa, >5NVW_2|Chains... at 100%
5nvxRCSB PDB    PDBbind97aa, >5NVX_2|Chains... at 100%
5nvyRCSB PDB    PDBbind97aa, >5NVY_2|Chains... at 100%
5nvzRCSB PDB    PDBbind97aa, >5NVZ_2|Chains... at 100%
5nw0RCSB PDB    PDBbind97aa, >5NW0_2|Chains... at 100%
5nw1RCSB PDB    PDBbind97aa, >5NW1_2|Chains... at 100%
5nw2RCSB PDB    PDBbind97aa, >5NW2_2|Chains... at 100%
5t35RCSB PDB    PDBbind97aa, >5T35_3|Chains... at 100%
6fmiRCSB PDB    PDBbind97aa, >6FMI_2|Chains... at 100%
6fmjRCSB PDB    PDBbind97aa, >6FMJ_2|Chains... at 100%
6fmkRCSB PDB    PDBbind97aa, >6FMK_2|Chains... at 100%
6gfyRCSB PDB    PDBbind97aa, >6GFY_2|Chains... at 100%
6gfzRCSB PDB    PDBbind97aa, >6GFZ_2|Chains... at 100%
6gmxRCSB PDB    PDBbind97aa, >6GMX_2|Chains... at 100%
6hr2RCSB PDB    PDBbind97aa, >6HR2_3|Chains... at 100%
6hayRCSB PDB    PDBbind97aa, >6HAY_3|Chains... at 100%
6haxRCSB PDB    PDBbind97aa, >6HAX_3|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6gmq
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namevon Hippel-Lindau disease tumor suppressor
Ligand NameF4K
EC.Number E.C.-.-.-.-
Resolution 2.76(Å)
Affinity (Kd/Ki/IC50)Kd=5.0mM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Med. Chem. Vol. 61: pp. 7387-7393
Ligand Properties
Formula C11H11NO
Molecular Weight 173.211
Exact Mass 173.084
No. of atoms 24
No. of bonds 25
Polar Surface Area 25.16
LOGP Value 1.44      (Computed with XLOGP3)
1.97      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P40337  Q15369  Q15370  
Entrez Gene IDNCBI Entrez Gene ID: 7428  6921  6923  
ASDInformation of known allosteric effects of PDB entries
 
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