Browse entries in the PDBbind-CN Database

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Related entries of code: 6gnp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6gnmRCSB PDB    PDBbind135aa, >6GNM_1|Chains... *
6gnrRCSB PDB    PDBbind135aa, >6GNR_1|Chains... at 100%
6gnwRCSB PDB    PDBbind135aa, >6GNW_1|Chains... at 100%
6gonRCSB PDB    PDBbind135aa, >6GON_1|Chains... at 100%
6gooRCSB PDB    PDBbind135aa, >6GOO_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6grpRCSB PDB    PDBbindF4Z
Entry Information
PDB ID6gnp
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameTransthyretin(TTR)
Ligand NameF4Z
EC.Number E.C.-.-.-.-
Resolution 2.02(Å)
Affinity (Kd/Ki/IC50)Kd=28.41uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Environ. Sci. Technol. Vol. 52: pp. 11865 - 11874
Ligand Properties
Formula C5H2Cl3NO
Molecular Weight 198.434
Exact Mass 196.920
No. of atoms 12
No. of bonds 12
Polar Surface Area 29.43
LOGP Value 2.39      (Computed with XLOGP3)
1.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9PTT3  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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