Browse entries in the PDBbind-CN Database

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Related entries of code: 6ipl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6ipmRCSB PDB    PDBbind356aa, >6IPM_1|Chain... at 100%
6ipkRCSB PDB    PDBbind356aa, >6IPK_1|Chain... at 100%
6ipjRCSB PDB    PDBbind356aa, >6IPJ_1|Chain... at 100%
6ipiRCSB PDB    PDBbind356aa, >6IPI_1|Chain... at 100%
6iphRCSB PDB    PDBbind356aa, >6IPH_1|Chain... at 100%
6ak9RCSB PDB    PDBbind356aa, >6AK9_1|Chain... at 100%
6ak8RCSB PDB    PDBbind356aa, >6AK8_1|Chain... at 100%
6ak6RCSB PDB    PDBbind356aa, >6AK6_1|Chain... at 100%
6aehRCSB PDB    PDBbind356aa, >6AEH_1|Chain... at 100%
6aecRCSB PDB    PDBbind356aa, >6AEC_1|Chain... *
6ak5RCSB PDB    PDBbind356aa, >6AK5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h7aRCSB PDB    PDBbindDTP
5ey4RCSB PDB    PDBbindDTP
5im3RCSB PDB    PDBbindDTP
5olkRCSB PDB    PDBbindDTP
6jonRCSB PDB    PDBbindDTP
6iphRCSB PDB    PDBbindDTP
Entry Information
PDB ID6ipl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA-directed DNA/RNA polymerase mu
Ligand NameDTP
EC.Number E.C.2.7.7.7
Resolution 1.64(Å)
Affinity (Kd/Ki/IC50)Kd=153uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 8489-8502
Ligand Properties
Formula C10H19N5O12P3
Molecular Weight 494.205
Exact Mass 494.024
No. of atoms 49
No. of bonds 51
Polar Surface Area 309.15
LOGP Value -5.09      (Computed with XLOGP3)
-1.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NP87  
Entrez Gene IDNCBI Entrez Gene ID: 27434  
ASDInformation of known allosteric effects of PDB entries
 
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