Browse entries in the PDBbind-CN Database

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Related entries of code: 6iyw
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6rrmRCSB PDB    PDBbind355aa, >6RRM_1|Chains... *
6iyvRCSB PDB    PDBbind272aa, >6IYV_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4jmxRCSB PDB    PDBbindIM2

Entry Information
PDB ID6iyw
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameL,D-transpeptidase 2
Ligand NameIM2
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Kd=58.8nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochem. Biophys. Res. Commun. Vol. 510: pp. 254-260
Ligand Properties
Formula C10H15NO4S
Molecular Weight 245.295
Exact Mass 245.072
No. of atoms 31
No. of bonds 31
Polar Surface Area 112.26
LOGP Value 0.65      (Computed with XLOGP3)
-0.35      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): I6Y9J2  
Entrez Gene IDNCBI Entrez Gene ID: 888160  
ASDInformation of known allosteric effects of PDB entries

 
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