Browse entries in the PDBbind-CN Database

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Related entries of code: 6j7l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2v54RCSB PDB    PDBbindTYD

Entry Information
PDB ID6j7l
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEarp
Ligand NameTYD
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)Kd=31.4uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Bacteriol. Vol. 201: pp. -
Ligand Properties
Formula C10H18N2O11P2
Molecular Weight 404.204
Exact Mass 404.039
No. of atoms 43
No. of bonds 44
Polar Surface Area 231.11
LOGP Value -3.94      (Computed with XLOGP3)
-2.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9HZZ1  
Entrez Gene IDNCBI Entrez Gene ID: 882634  
ASDInformation of known allosteric effects of PDB entries

 
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