Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6jdi
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5exxRCSB PDB    PDBbind343aa, >5EXX_1|Chain... *
6jdlRCSB PDB    PDBbind263aa, >6JDL_1|Chain... at 97%
6j7eRCSB PDB    PDBbind263aa, >6J7E_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1njfRCSB PDB    PDBbindAGS
1xxhRCSB PDB    PDBbindAGS
3hu1RCSB PDB    PDBbindAGS
3hu2RCSB PDB    PDBbindAGS
3hu3RCSB PDB    PDBbindAGS
4klnRCSB PDB    PDBbindAGS
4ko8RCSB PDB    PDBbindAGS
5mtvRCSB PDB    PDBbindAGS
5zt1RCSB PDB    PDBbindAGS
6jdlRCSB PDB    PDBbindAGS
6j7eRCSB PDB    PDBbindAGS
6bs4RCSB PDB    PDBbindAGS

Entry Information
PDB ID6jdi
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameFleQ-H287N
Ligand NameAGS
EC.Number E.C.-.-.-.-
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)Kd=7.8uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Acs Chem.Biol. Vol. 14: pp. 1515-1527
Ligand Properties
Formula C10H19N5O12P3S
Molecular Weight 526.270
Exact Mass 525.996
No. of atoms 50
No. of bonds 52
Polar Surface Area 347.95
LOGP Value -5.01      (Computed with XLOGP3)
-1.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): G3XCV0  
Entrez Gene IDNCBI Entrez Gene ID: 881960  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com