Browse entries in the PDBbind-CN Database

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Related entries of code: 6md0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1i7iRCSB PDB    PDBbind292aa, >1I7I_1|Chains... at 98%
1nyxRCSB PDB    PDBbind276aa, >1NYX_1|Chains... at 100%
1zeoRCSB PDB    PDBbind277aa, >1ZEO_1|Chains... at 99%
2athRCSB PDB    PDBbind271aa, >2ATH_1|Chains... at 100%
2f4bRCSB PDB    PDBbind271aa, >2F4B_1|Chains... at 100%
2g0gRCSB PDB    PDBbind271aa, >2G0G_1|Chains... at 100%
2g0hRCSB PDB    PDBbind271aa, >2G0H_1|Chains... at 100%
2gtkRCSB PDB    PDBbind271aa, >2GTK_1|Chain... at 100%
2i4jRCSB PDB    PDBbind286aa, >2I4J_1|Chains... at 100%
2i4pRCSB PDB    PDBbind286aa, >2I4P_1|Chains... at 100%
2i4zRCSB PDB    PDBbind286aa, >2I4Z_1|Chains... at 100%
2p4yRCSB PDB    PDBbind277aa, >2P4Y_1|Chains... at 99%
2q8sRCSB PDB    PDBbind271aa, >2Q8S_1|Chains... at 100%
2yfeRCSB PDB    PDBbind287aa, >2YFE_1|Chains... at 100%
3adsRCSB PDB    PDBbind287aa, >3ADS_1|Chains... at 100%
3adtRCSB PDB    PDBbind287aa, >3ADT_1|Chains... at 100%
3aduRCSB PDB    PDBbind287aa, >3ADU_1|Chains... at 100%
3advRCSB PDB    PDBbind287aa, >3ADV_1|Chains... at 100%
3bc5RCSB PDB    PDBbind296aa, >3BC5_1|Chain... at 100%
3ia6RCSB PDB    PDBbind271aa, >3IA6_1|Chains... at 100%
3osiRCSB PDB    PDBbind285aa, >3OSI_1|Chains... at 100%
3oswRCSB PDB    PDBbind285aa, >3OSW_1|Chains... at 100%
3r5nRCSB PDB    PDBbind274aa, >3R5N_1|Chain... at 100%
3r8iRCSB PDB    PDBbind287aa, >3R8I_1|Chains... at 100%
3sz1RCSB PDB    PDBbind278aa, >3SZ1_1|Chains... at 100%
3ty0RCSB PDB    PDBbind277aa, >3TY0_1|Chains... at 99%
3u9qRCSB PDB    PDBbind269aa, >3U9Q_1|Chain... at 100%
4a4vRCSB PDB    PDBbind287aa, >4A4V_1|Chains... at 100%
4a4wRCSB PDB    PDBbind287aa, >4A4W_1|Chains... at 100%
4jazRCSB PDB    PDBbind287aa, >4JAZ_1|Chains... at 100%
4prgRCSB PDB    PDBbind270aa, >4PRG_1|Chains... at 100%
4r06RCSB PDB    PDBbind273aa, >4R06_1|Chains... at 100%
4xtaRCSB PDB    PDBbind278aa, >4XTA_1|Chains... at 100%
4xuhRCSB PDB    PDBbind278aa, >4XUH_1|Chains... at 100%
4xumRCSB PDB    PDBbind278aa, >4XUM_1|Chains... at 100%
4y29RCSB PDB    PDBbind269aa, >4Y29_1|Chain... at 100%
5f9bRCSB PDB    PDBbind287aa, >5F9B_1|Chains... at 100%
5lsgRCSB PDB    PDBbind304aa, >5LSG_1|Chains... *
5u5lRCSB PDB    PDBbind273aa, >5U5L_1|Chains... at 100%
6an1RCSB PDB    PDBbind286aa, >6AN1_1|Chains... at 100%
6c5qRCSB PDB    PDBbind281aa, >6C5Q_1|Chain... at 100%
6c5tRCSB PDB    PDBbind276aa, >6C5T_1|Chain... at 99%
6o68RCSB PDB    PDBbind275aa, >6O68_1|Chains... at 100%
6md4RCSB PDB    PDBbind275aa, >6MD4_1|Chains... at 100%
6fzgRCSB PDB    PDBbind276aa, >6FZG_1|Chain... at 99%
6dgrRCSB PDB    PDBbind297aa, >6DGR_1|Chains... at 95%
6dgqRCSB PDB    PDBbind276aa, >6DGQ_1|Chains... at 99%
6dgoRCSB PDB    PDBbind275aa, >6DGO_1|Chains... at 100%
6dglRCSB PDB    PDBbind276aa, >6DGL_1|Chains... at 99%
6aviRCSB PDB    PDBbind276aa, >6AVI_1|Chains... at 99%
5ugmRCSB PDB    PDBbind271aa, >5UGM_1|Chains... at 100%
6dhaRCSB PDB    PDBbind271aa, >6DHA_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fe3RCSB PDB    PDBbindOLA
1g74RCSB PDB    PDBbindOLA
1gniRCSB PDB    PDBbindOLA
1hmsRCSB PDB    PDBbindOLA
1lfoRCSB PDB    PDBbindOLA
1vyfRCSB PDB    PDBbindOLA
2lkkRCSB PDB    PDBbindOLA
3pguRCSB PDB    PDBbindOLA
Entry Information
PDB ID6md0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePeroxisome proliferator-activated receptor gamma
Ligand NameOLA
EC.Number E.C.-.-.-.-
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)Kd=1.27uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Elife Vol. 7: pp. -
Ligand Properties
Formula C18H34O2
Molecular Weight 282.461
Exact Mass 282.256
No. of atoms 54
No. of bonds 53
Polar Surface Area 37.3
LOGP Value 8.71      (Computed with XLOGP3)
6.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P37231  
Entrez Gene IDNCBI Entrez Gene ID: 5468  
ASDInformation of known allosteric effects of PDB entries
 
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