Browse entries in the PDBbind-CN Database

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Related entries of code: 6n5c
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4hn2RCSB PDB    PDBbind330aa, >4HN2_1|Chain... *
4nzmRCSB PDB    PDBbind330aa, >4NZM_1|Chain... at 100%
4nznRCSB PDB    PDBbind330aa, >4NZN_1|Chain... at 100%
4nzoRCSB PDB    PDBbind330aa, >4NZO_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6n5c
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePPIP5K2
Ligand NameKDJ
EC.Number E.C.-.-.-.-
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)IC50=375nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Medchemcomm Vol. 10: pp. 1165-1172
Ligand Properties
Formula C8H25F2NO24P6
Molecular Weight 743.116
Exact Mass 742.916
No. of atoms 66
No. of bonds 66
Polar Surface Area 520.93
LOGP Value -10.66      (Computed with XLOGP3)
-5.59      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 19
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 25
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O43314  
Entrez Gene IDNCBI Entrez Gene ID: 23262  
ASDInformation of known allosteric effects of PDB entries

 
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