Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6n96
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6n97RCSB PDB    PDBbind261aa, >6N97_1|Chains... at 100%
6n95RCSB PDB    PDBbind261aa, >6N95_1|Chains... at 100%
6n94RCSB PDB    PDBbind261aa, >6N94_1|Chains... at 100%
6n93RCSB PDB    PDBbind261aa, >6N93_1|Chains... at 100%
6n92RCSB PDB    PDBbind261aa, >6N92_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6n96
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMethylmalonyl-CoA decarboxylase
Ligand NameLCV
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Ki=3.8uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J. Am. Chem. Soc. Vol. 141: pp. 5121-5124
Ligand Properties
Formula C10H19N5O13P3
Molecular Weight 510.205
Exact Mass 510.019
No. of atoms 50
No. of bonds 52
Polar Surface Area 329.38
LOGP Value -6.15      (Computed with XLOGP3)
-2.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P52045  
Entrez Gene IDNCBI Entrez Gene ID: 61755028  947408  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com