Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6ndl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3v7cRCSB PDB    PDBbind329aa, >3V7C_1|Chain... at 99%
3v7sRCSB PDB    PDBbind329aa, >3V7S_1|Chain... at 99%
4dq2RCSB PDB    PDBbind328aa, >4DQ2_1|Chain... at 99%
6apwRCSB PDB    PDBbind329aa, >6APW_1|Chain... at 99%
6aqqRCSB PDB    PDBbind329aa, >6AQQ_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6ndl
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBiotin Protein Ligase
Ligand NameBQX
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=0.065uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Acs Chem.Biol. Vol. 14: pp. 1990-1997
Ligand Properties
Formula C19H30N10O4S2
Molecular Weight 526.636
Exact Mass 526.189
No. of atoms 65
No. of bonds 68
Polar Surface Area 231.73
LOGP Value -0.60      (Computed with XLOGP3)
3.15      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q2G258  
Entrez Gene IDNCBI Entrez Gene ID: 3919915  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com