Browse entries in the PDBbind-CN Database

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Related entries of code: 6np4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6o5uRCSB PDB    PDBbind302aa, >6O5U_1|Chain... at 100%
6ntjRCSB PDB    PDBbind302aa, >6NTJ_1|Chain... at 100%
6ntiRCSB PDB    PDBbind302aa, >6NTI_1|Chain... *
6np5RCSB PDB    PDBbind268aa, >6NP5_1|Chain... at 100%
6np3RCSB PDB    PDBbind268aa, >6NP3_1|Chain... at 100%
6np2RCSB PDB    PDBbind268aa, >6NP2_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6np4
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameAAC-VIa
Ligand NameTOY
EC.Number E.C.2.3.1.81
Resolution 1.15(Å)
Affinity (Kd/Ki/IC50)Kd=36uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Angew.Chem.Int.Ed.Engl. Vol. 58: pp. 16260-16266
Ligand Properties
Formula C18H42N5O9
Molecular Weight 472.554
Exact Mass 472.298
No. of atoms 74
No. of bonds 76
Polar Surface Area 276.27
LOGP Value -6.23      (Computed with XLOGP3)
-9.88      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q47030  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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