Browse entries in the PDBbind-CN Database

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Related entries of code: 6o0m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2o22RCSB PDB    PDBbind164aa, >2O22_1|Chain... at 94%
2w3lRCSB PDB    PDBbind144aa, >2W3L_1|Chains... at 99%
4aq3RCSB PDB    PDBbind169aa, >4AQ3_1|Chains... at 90%
4iehRCSB PDB    PDBbind169aa, >4IEH_1|Chain... at 91%
4lvtRCSB PDB    PDBbind166aa, >4LVT_1|Chains... at 93%
4lxdRCSB PDB    PDBbind166aa, >4LXD_1|Chain... at 93%
4manRCSB PDB    PDBbind166aa, >4MAN_1|Chains... at 93%
6gl8RCSB PDB    PDBbind172aa, >6GL8_1|Chain... *
6o0pRCSB PDB    PDBbind166aa, >6O0P_1|Chain... at 92%
6o0oRCSB PDB    PDBbind166aa, >6O0O_1|Chains... at 92%
6o0kRCSB PDB    PDBbind166aa, >6O0K_1|Chain... at 93%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6o0pRCSB PDB    PDBbindLBM
6o0kRCSB PDB    PDBbindLBM
Entry Information
PDB ID6o0m
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBCL-2 F104L mutation
Ligand NameLBM
EC.Number E.C.-.-.-.-
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Ki=0.46nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Nat Commun Vol. 10: pp. 2385-2385
Ligand Properties
Formula C45H51ClN7O7S
Molecular Weight 869.447
Exact Mass 868.326
No. of atoms 112
No. of bonds 119
Polar Surface Area 184.29
LOGP Value 8.18      (Computed with XLOGP3)
10.94      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 8
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P10415  Q07817  
Entrez Gene IDNCBI Entrez Gene ID: 596  598  
ASDInformation of known allosteric effects of PDB entries
 
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