Browse entries in the PDBbind-CN Database

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Related entries of code: 6oz6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6oyzRCSB PDB    PDBbind137aa, >6OYZ_1|Chains... at 100%
6oyhRCSB PDB    PDBbind137aa, >6OYH_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6oz6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMraY
Ligand NameNKD
EC.Number E.C.2.7.8.13
Resolution 3.7(Å)
Affinity (Kd/Ki/IC50)IC50=52nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Nat Commun Vol. 10: pp. 2917-2917
Ligand Properties
Formula C38H49N8O13S
Molecular Weight 857.906
Exact Mass 857.314
No. of atoms 109
No. of bonds 112
Polar Surface Area 351.73
LOGP Value -3.17      (Computed with XLOGP3)
-1.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 9
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 25
No. of Nitrogen and Oxygen Atoms: 21
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O66465  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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