Browse entries in the PDBbind-CN Database

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Related entries of code: 6p83
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6p8aRCSB PDB    PDBbind343aa, >6P8A_1|Chains... at 98%
6p89RCSB PDB    PDBbind343aa, >6P89_1|Chains... at 98%
6p88RCSB PDB    PDBbind343aa, >6P88_1|Chains... at 98%
6p87RCSB PDB    PDBbind343aa, >6P87_1|Chains... at 98%
6p86RCSB PDB    PDBbind343aa, >6P86_1|Chains... at 98%
6p85RCSB PDB    PDBbind343aa, >6P85_1|Chains... at 98%
6p84RCSB PDB    PDBbind343aa, >6P84_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6p83
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameE.coli LpxD
Ligand NameO3Y
EC.Number E.C.2.3.1.191
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=0.08uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2020) ACS Infect Dis Vol. 6: pp. 1480-1489
Ligand Properties
Formula C24H20ClN3O2
Molecular Weight 417.888
Exact Mass 417.124
No. of atoms 50
No. of bonds 54
Polar Surface Area 67.75
LOGP Value 5.38      (Computed with XLOGP3)
5.19      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P21645  
Entrez Gene IDNCBI Entrez Gene ID: 61754853  944882  
ASDInformation of known allosteric effects of PDB entries

 
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