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Related entries of code: 6pyb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1d2sRCSB PDB    PDBbind170aa, >1D2S_1|Chain... at 99%
1kdkRCSB PDB    PDBbind177aa, >1KDK_1|Chain... at 99%
1lhuRCSB PDB    PDBbind189aa, >1LHU_1|Chain... at 99%
1lhvRCSB PDB    PDBbind189aa, >1LHV_1|Chain... at 99%
1lhwRCSB PDB    PDBbind189aa, >1LHW_1|Chain... at 99%
6pyaRCSB PDB    PDBbind205aa, >6PYA_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6pyb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSex Hormone-binding globulin mutant E176K
Ligand NameP5G
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)IC50=4200nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2020) J.Biol.Chem. Vol. 295: pp. 1202-1211
Ligand Properties
Formula C20H24O5
Molecular Weight 344.402
Exact Mass 344.162
No. of atoms 49
No. of bonds 51
Polar Surface Area 68.15
LOGP Value 3.51      (Computed with XLOGP3)
3.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04278  
Entrez Gene IDNCBI Entrez Gene ID: 6462  
ASDInformation of known allosteric effects of PDB entries
 
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