Browse entries in the PDBbind-CN Database

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Related entries of code: 6qqz
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6qrgRCSB PDB    PDBbind244aa, >6QRG_1|Chains... at 100%
6qrfRCSB PDB    PDBbind244aa, >6QRF_1|Chains... at 100%
6qreRCSB PDB    PDBbind244aa, >6QRE_1|Chains... at 100%
6qrdRCSB PDB    PDBbind244aa, >6QRD_1|Chains... at 100%
6qraRCSB PDB    PDBbind244aa, >6QRA_1|Chains... at 100%
6qr9RCSB PDB    PDBbind244aa, >6QR9_1|Chains... at 100%
6qr7RCSB PDB    PDBbind244aa, >6QR7_1|Chains... at 100%
6qr4RCSB PDB    PDBbind244aa, >6QR4_1|Chains... at 100%
6qr3RCSB PDB    PDBbind244aa, >6QR3_1|Chains... at 100%
6qr2RCSB PDB    PDBbind244aa, >6QR2_1|Chains... at 100%
6qr1RCSB PDB    PDBbind244aa, >6QR1_1|Chains... at 100%
6qr0RCSB PDB    PDBbind244aa, >6QR0_1|Chains... at 100%
6qqwRCSB PDB    PDBbind244aa, >6QQW_1|Chains... at 100%
6qqvRCSB PDB    PDBbind244aa, >6QQV_1|Chains... at 100%
6qquRCSB PDB    PDBbind244aa, >6QQU_1|Chains... at 100%
6qqtRCSB PDB    PDBbind244aa, >6QQT_1|Chains... at 100%
6qqqRCSB PDB    PDBbind244aa, >6QQQ_1|Chains... *
6qrcRCSB PDB    PDBbind244aa, >6QRC_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6qqz
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NametRNA (guanine-N(1)-)-methyltransferase
Ligand NameJEB
EC.Number E.C.2.1.1.228
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=0.18uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 7210-7232
Ligand Properties
Formula C18H14N6
Molecular Weight 314.344
Exact Mass 314.128
No. of atoms 38
No. of bonds 41
Polar Surface Area 96.31
LOGP Value 2.40      (Computed with XLOGP3)
3.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B1MDI3  
Entrez Gene IDNCBI Entrez Gene ID: 57083022  
ASDInformation of known allosteric effects of PDB entries

 
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