Browse entries in the PDBbind-CN Database

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Related entries of code: 6r4v
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2q80RCSB PDB    PDBbind301aa, >2Q80_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2f94RCSB PDB    PDBbindBFQ
4umjRCSB PDB    PDBbindBFQ

Entry Information
PDB ID6r4v
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman geranylgeranyl diphosphate synthase
Ligand NameBFQ
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=1.74uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Mol.Pharmacol. Vol. 96: pp. 580-588
Ligand Properties
Formula C9H26NO7P2
Molecular Weight 322.253
Exact Mass 322.118
No. of atoms 45
No. of bonds 44
Polar Surface Area 173.23
LOGP Value -4.45      (Computed with XLOGP3)
-1.79      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O95749  
Entrez Gene IDNCBI Entrez Gene ID: 9453  
ASDInformation of known allosteric effects of PDB entries

 
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