Browse entries in the PDBbind-CN Database

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Related entries of code: 6skd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4d8nRCSB PDB    PDBbind223aa, >4D8N_1|Chain... at 98%
6qhcRCSB PDB    PDBbind223aa, >6QHC_1|Chains... at 98%
6qhbRCSB PDB    PDBbind223aa, >6QHB_1|Chains... at 98%
6qhaRCSB PDB    PDBbind223aa, >6QHA_1|Chains... at 98%
6qh9RCSB PDB    PDBbind223aa, >6QH9_1|Chains... at 98%
6qfhRCSB PDB    PDBbind222aa, >6QFH_1|Chains... at 100%
6qfgRCSB PDB    PDBbind223aa, >6QFG_1|Chains... at 99%
6qffRCSB PDB    PDBbind222aa, >6QFF_1|Chains... at 98%
6skbRCSB PDB    PDBbind289aa, >6SKB_1|Chains... *
6skcRCSB PDB    PDBbind223aa, >6SKC_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6skd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman Kallikrein 6 (I218Y)
Ligand NameLH2
EC.Number E.C.-.-.-.-
Resolution 2.26(Å)
Affinity (Kd/Ki/IC50)IC50=1585nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Bioorg.Med.Chem.Lett. Vol. 29: pp. 126675-126675
Ligand Properties
Formula C16H20BN3O2
Molecular Weight 297.160
Exact Mass 297.165
No. of atoms 42
No. of bonds 44
Polar Surface Area 82.1
LOGP Value 3.93      (Computed with XLOGP3)
-0.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q92876  
Entrez Gene IDNCBI Entrez Gene ID: 5653  
ASDInformation of known allosteric effects of PDB entries
 
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