Browse entries in the PDBbind-CN Database

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Related entries of code: 1ndj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1df8RCSB PDB    PDBbind127aa, >1DF8_1|Chains... at 99%
1kl3RCSB PDB    PDBbind127aa, >1KL3_1|Chains... at 96%
1kl5RCSB PDB    PDBbind127aa, >1KL5_1|Chains... at 96%
1n43RCSB PDB    PDBbind127aa, >1N43_1|Chains... at 99%
1n9mRCSB PDB    PDBbind127aa, >1N9M_1|Chains... at 99%
1rstRCSB PDB    PDBbind127aa, >1RST_1|Chain... at 99%
1sldRCSB PDB    PDBbind135aa, >1SLD_1|Chain... at 100%
1sleRCSB PDB    PDBbind135aa, >1SLE_1|Chains... at 100%
1slgRCSB PDB    PDBbind135aa, >1SLG_1|Chains... at 100%
1sreRCSB PDB    PDBbind121aa, >1SRE_1|Chains... at 100%
1srgRCSB PDB    PDBbind121aa, >1SRG_1|Chains... at 100%
1sriRCSB PDB    PDBbind121aa, >1SRI_1|Chains... at 100%
1stpRCSB PDB    PDBbind159aa, >1STP_1|Chain... at 100%
1strRCSB PDB    PDBbind123aa, >1STR_1|Chains... at 100%
1stsRCSB PDB    PDBbind123aa, >1STS_1|Chains... at 100%
1swkRCSB PDB    PDBbind127aa, >1SWK_1|Chains... at 99%
1swnRCSB PDB    PDBbind127aa, >1SWN_1|Chains... at 99%
1swpRCSB PDB    PDBbind127aa, >1SWP_1|Chains... at 99%
1swrRCSB PDB    PDBbind127aa, >1SWR_1|Chains... at 99%
1vwfRCSB PDB    PDBbind123aa, >1VWF_1|Chain... at 100%
1vwlRCSB PDB    PDBbind123aa, >1VWL_1|Chains... at 100%
1vwnRCSB PDB    PDBbind123aa, >1VWN_1|Chain... at 100%
2f01RCSB PDB    PDBbind127aa, >2F01_1|Chains... at 100%
2gh7RCSB PDB    PDBbind127aa, >2GH7_1|Chains... at 100%
2izlRCSB PDB    PDBbind123aa, >2IZL_1|Chains... at 100%
3wznRCSB PDB    PDBbind129aa, >3WZN_1|Chains... at 92%
3wzpRCSB PDB    PDBbind129aa, >3WZP_1|Chains... at 92%
4y59RCSB PDB    PDBbind121aa, >4Y59_1|Chains... at 100%
4y5dRCSB PDB    PDBbind122aa, >4Y5D_1|Chains... at 100%
5b5fRCSB PDB    PDBbind120aa, >5B5F_1|Chains... at 100%
5b5gRCSB PDB    PDBbind120aa, >5B5G_1|Chains... at 100%
5n8tRCSB PDB    PDBbind183aa, >5N8T_1|Chain... at 100%
5n99RCSB PDB    PDBbind183aa, >5N99_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1avdRCSB PDB    PDBbindBTN
1df8RCSB PDB    PDBbindBTN
1n43RCSB PDB    PDBbindBTN
1n9mRCSB PDB    PDBbindBTN
1stpRCSB PDB    PDBbindBTN
1swgRCSB PDB    PDBbindBTN
1swkRCSB PDB    PDBbindBTN
1swnRCSB PDB    PDBbindBTN
1swpRCSB PDB    PDBbindBTN
1swrRCSB PDB    PDBbindBTN
2aviRCSB PDB    PDBbindBTN
2c1qRCSB PDB    PDBbindBTN
2f01RCSB PDB    PDBbindBTN
2gh7RCSB PDB    PDBbindBTN
2jgsRCSB PDB    PDBbindBTN
2uywRCSB PDB    PDBbindBTN
2zscRCSB PDB    PDBbindBTN
3efrRCSB PDB    PDBbindBTN
3ew2RCSB PDB    PDBbindBTN
3rdoRCSB PDB    PDBbindBTN
3t2wRCSB PDB    PDBbindBTN
3wznRCSB PDB    PDBbindBTN
4bcsRCSB PDB    PDBbindBTN
4bj8RCSB PDB    PDBbindBTN
4dveRCSB PDB    PDBbindBTN
4ggzRCSB PDB    PDBbindBTN
4jnjRCSB PDB    PDBbindBTN
Entry Information
PDB ID1ndj
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namestreptavidin
Ligand NameBTN
EC.Number E.C.-.-.-.-
Resolution 1.81(Å)
Affinity (Kd/Ki/IC50)Kd~0.69pM
Release Year2003
Protein/NA SequenceCheck fasta file
Primary Reference Acta Crystallogr., Sect.D v59 pp. 1567-73, 2003
Ligand Properties
Formula C10H16N2O3S
Molecular Weight 244.311
Exact Mass 244.088
No. of atoms 32
No. of bonds 33
Polar Surface Area 103.73
LOGP Value 1.78      (Computed with XLOGP3)
1.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P22629  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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