Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4y5d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1df8RCSB PDB    PDBbind127aa, >1DF8_1|Chains... at 99%
1kl3RCSB PDB    PDBbind127aa, >1KL3_1|Chains... at 96%
1kl5RCSB PDB    PDBbind127aa, >1KL5_1|Chains... at 96%
1n43RCSB PDB    PDBbind127aa, >1N43_1|Chains... at 99%
1n9mRCSB PDB    PDBbind127aa, >1N9M_1|Chains... at 99%
1ndjRCSB PDB    PDBbind127aa, >1NDJ_1|Chains... at 99%
1rstRCSB PDB    PDBbind127aa, >1RST_1|Chain... at 99%
1sldRCSB PDB    PDBbind135aa, >1SLD_1|Chain... at 100%
1sleRCSB PDB    PDBbind135aa, >1SLE_1|Chains... at 100%
1slgRCSB PDB    PDBbind135aa, >1SLG_1|Chains... at 100%
1sreRCSB PDB    PDBbind121aa, >1SRE_1|Chains... at 100%
1srgRCSB PDB    PDBbind121aa, >1SRG_1|Chains... at 100%
1sriRCSB PDB    PDBbind121aa, >1SRI_1|Chains... at 100%
1stpRCSB PDB    PDBbind159aa, >1STP_1|Chain... at 100%
1strRCSB PDB    PDBbind123aa, >1STR_1|Chains... at 100%
1stsRCSB PDB    PDBbind123aa, >1STS_1|Chains... at 100%
1swkRCSB PDB    PDBbind127aa, >1SWK_1|Chains... at 99%
1swnRCSB PDB    PDBbind127aa, >1SWN_1|Chains... at 99%
1swpRCSB PDB    PDBbind127aa, >1SWP_1|Chains... at 99%
1swrRCSB PDB    PDBbind127aa, >1SWR_1|Chains... at 99%
1vwfRCSB PDB    PDBbind123aa, >1VWF_1|Chain... at 100%
1vwlRCSB PDB    PDBbind123aa, >1VWL_1|Chains... at 100%
1vwnRCSB PDB    PDBbind123aa, >1VWN_1|Chain... at 100%
2f01RCSB PDB    PDBbind127aa, >2F01_1|Chains... at 100%
2gh7RCSB PDB    PDBbind127aa, >2GH7_1|Chains... at 100%
2izlRCSB PDB    PDBbind123aa, >2IZL_1|Chains... at 100%
3wznRCSB PDB    PDBbind129aa, >3WZN_1|Chains... at 92%
3wzpRCSB PDB    PDBbind129aa, >3WZP_1|Chains... at 92%
4y59RCSB PDB    PDBbind121aa, >4Y59_1|Chains... at 100%
5b5fRCSB PDB    PDBbind120aa, >5B5F_1|Chains... at 100%
5b5gRCSB PDB    PDBbind120aa, >5B5G_1|Chains... at 100%
5n8tRCSB PDB    PDBbind183aa, >5N8T_1|Chain... at 100%
5n99RCSB PDB    PDBbind183aa, >5N99_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4y5d
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameStreptavidin
Ligand NameMT6
EC.Number E.C.-.-.-.-
Resolution 1.2(Å)
Affinity (Kd/Ki/IC50)Kd=1.2uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Am.Chem.Soc. Vol. 137: pp. 10464-10467
Ligand Properties
Formula C15H11NO4
Molecular Weight 269.252
Exact Mass 269.069
No. of atoms 31
No. of bonds 33
Polar Surface Area 72.3
LOGP Value 1.95      (Computed with XLOGP3)
2.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P22629  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com