Browse entries in the PDBbind-CN Database

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Related entries of code: 1rt9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pf7RCSB PDB    PDBbind289aa, >1PF7_1|Chain... at 98%
1pwyRCSB PDB    PDBbind288aa, >1PWY_1|Chain... at 98%
1rr6RCSB PDB    PDBbind289aa, >1RR6_1|Chain... at 98%
1v2hRCSB PDB    PDBbind288aa, >1V2H_1|Chain... at 98%
1v41RCSB PDB    PDBbind288aa, >1V41_1|Chain... at 98%
2oc4RCSB PDB    PDBbind289aa, >2OC4_1|Chain... at 98%
2oc9RCSB PDB    PDBbind289aa, >2OC9_1|Chain... at 98%
2on6RCSB PDB    PDBbind289aa, >2ON6_1|Chain... at 98%
2q7oRCSB PDB    PDBbind289aa, >2Q7O_1|Chain... at 98%
3bgsRCSB PDB    PDBbind289aa, >3BGS_1|Chain... at 98%
3d1vRCSB PDB    PDBbind289aa, >3D1V_1|Chain... at 98%
3inyRCSB PDB    PDBbind289aa, >3INY_1|Chain... at 98%
3k8oRCSB PDB    PDBbind289aa, >3K8O_1|Chains... at 98%
3k8qRCSB PDB    PDBbind289aa, >3K8Q_1|Chain... at 98%
4earRCSB PDB    PDBbind324aa, >4EAR_1|Chains... *
4eb8RCSB PDB    PDBbind324aa, >4EB8_1|Chains... at 100%
5etjRCSB PDB    PDBbind324aa, >5ETJ_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1b8oRCSB PDB    PDBbindIMH
1g2oRCSB PDB    PDBbindIMH
1nw4RCSB PDB    PDBbindIMH
1pf7RCSB PDB    PDBbindIMH
1rr6RCSB PDB    PDBbindIMH
2ff1RCSB PDB    PDBbindIMH
2ff2RCSB PDB    PDBbindIMH
2oc4RCSB PDB    PDBbindIMH
2oc9RCSB PDB    PDBbindIMH
2on6RCSB PDB    PDBbindIMH
2q7oRCSB PDB    PDBbindIMH
3b9gRCSB PDB    PDBbindIMH
Entry Information
PDB ID1rt9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman purine nucleoside phosphorylase
Ligand NameIMH
EC.Number E.C.2.4.2.1
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Ki=56pM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J. Med. Chem., Vol.52, pp.1126-1143
Ligand Properties
Formula C11H15N4O4
Molecular Weight 267.261
Exact Mass 267.109
No. of atoms 34
No. of bonds 36
Polar Surface Area 138.84
LOGP Value -2.30      (Computed with XLOGP3)
-1.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00491  
Entrez Gene IDNCBI Entrez Gene ID: 4860  
ASDInformation of known allosteric effects of PDB entries
 
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