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Related entries of code: 3d1v
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pf7RCSB PDB    PDBbind289aa, >1PF7_1|Chain... at 98%
1pwyRCSB PDB    PDBbind288aa, >1PWY_1|Chain... at 98%
1rr6RCSB PDB    PDBbind289aa, >1RR6_1|Chain... at 98%
1rt9RCSB PDB    PDBbind289aa, >1RT9_1|Chain... at 98%
1v2hRCSB PDB    PDBbind288aa, >1V2H_1|Chain... at 98%
1v41RCSB PDB    PDBbind288aa, >1V41_1|Chain... at 98%
2oc4RCSB PDB    PDBbind289aa, >2OC4_1|Chain... at 98%
2oc9RCSB PDB    PDBbind289aa, >2OC9_1|Chain... at 98%
2on6RCSB PDB    PDBbind289aa, >2ON6_1|Chain... at 98%
2q7oRCSB PDB    PDBbind289aa, >2Q7O_1|Chain... at 98%
3bgsRCSB PDB    PDBbind289aa, >3BGS_1|Chain... at 98%
3inyRCSB PDB    PDBbind289aa, >3INY_1|Chain... at 98%
3k8oRCSB PDB    PDBbind289aa, >3K8O_1|Chains... at 98%
3k8qRCSB PDB    PDBbind289aa, >3K8Q_1|Chain... at 98%
4earRCSB PDB    PDBbind324aa, >4EAR_1|Chains... *
4eb8RCSB PDB    PDBbind324aa, >4EB8_1|Chains... at 100%
5etjRCSB PDB    PDBbind324aa, >5ETJ_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3d1v
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePurine nucleoside phosphorylase
Ligand NameD1V
EC.Number E.C.2.4.2.1
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=0.324mM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Arch.Biochem.Biophys. Vol. 479: pp. 28-38
Ligand Properties
Formula C8H6N2OS
Molecular Weight 178.211
Exact Mass 178.020
No. of atoms 18
No. of bonds 19
Polar Surface Area 80.74
LOGP Value 1.04      (Computed with XLOGP3)
1.59      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00491  
Entrez Gene IDNCBI Entrez Gene ID: 4860  
ASDInformation of known allosteric effects of PDB entries
 
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