Browse entries in the PDBbind-CN Database

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Related entries of code: 1s39
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1enuRCSB PDB    PDBbind386aa, >1ENU_1|Chain... at 100%
1f3eRCSB PDB    PDBbind386aa, >1F3E_1|Chain... at 100%
1k4gRCSB PDB    PDBbind386aa, >1K4G_1|Chain... at 100%
1k4hRCSB PDB    PDBbind386aa, >1K4H_1|Chain... at 100%
1n2vRCSB PDB    PDBbind386aa, >1N2V_1|Chain... at 100%
1q4wRCSB PDB    PDBbind386aa, >1Q4W_1|Chain... at 100%
1q63RCSB PDB    PDBbind386aa, >1Q63_1|Chain... at 100%
1q65RCSB PDB    PDBbind386aa, >1Q65_1|Chain... at 100%
1q66RCSB PDB    PDBbind386aa, >1Q66_1|Chain... at 100%
1r5yRCSB PDB    PDBbind386aa, >1R5Y_1|Chain... at 100%
1s38RCSB PDB    PDBbind386aa, >1S38_1|Chain... at 100%
2qzrRCSB PDB    PDBbind385aa, >2QZR_1|Chain... at 100%
2z1wRCSB PDB    PDBbind386aa, >2Z1W_1|Chain... at 99%
3eosRCSB PDB    PDBbind386aa, >3EOS_1|Chain... at 100%
3eouRCSB PDB    PDBbind386aa, >3EOU_1|Chain... at 100%
3gc4RCSB PDB    PDBbind386aa, >3GC4_1|Chain... at 100%
3gc5RCSB PDB    PDBbind386aa, >3GC5_1|Chain... at 100%
3ge7RCSB PDB    PDBbind386aa, >3GE7_1|Chain... at 100%
3rr4RCSB PDB    PDBbind386aa, >3RR4_1|Chain... at 100%
3s1gRCSB PDB    PDBbind386aa, >3S1G_1|Chain... at 100%
3sm0RCSB PDB    PDBbind386aa, >3SM0_1|Chain... at 100%
3tllRCSB PDB    PDBbind386aa, >3TLL_1|Chain... at 100%
4kwoRCSB PDB    PDBbind388aa, >4KWO_1|Chain... *
4lbuRCSB PDB    PDBbind388aa, >4LBU_1|Chain... at 100%
4leqRCSB PDB    PDBbind388aa, >4LEQ_1|Chain... at 100%
4pujRCSB PDB    PDBbind386aa, >4PUJ_1|Chain... at 100%
4pukRCSB PDB    PDBbind386aa, >4PUK_1|Chain... at 100%
4pulRCSB PDB    PDBbind386aa, >4PUL_1|Chain... at 99%
4pumRCSB PDB    PDBbind388aa, >4PUM_1|Chain... at 99%
4q4oRCSB PDB    PDBbind386aa, >4Q4O_1|Chain... at 100%
4q4pRCSB PDB    PDBbind386aa, >4Q4P_1|Chain... at 100%
4q4qRCSB PDB    PDBbind386aa, >4Q4Q_1|Chain... at 100%
4q4rRCSB PDB    PDBbind386aa, >4Q4R_1|Chain... at 100%
4q4sRCSB PDB    PDBbind386aa, >4Q4S_1|Chain... at 100%
5jxqRCSB PDB    PDBbind386aa, >5JXQ_1|Chain... at 100%
6fpuRCSB PDB    PDBbind386aa, >6FPU_1|Chain... at 100%
6fmnRCSB PDB    PDBbind386aa, >6FMN_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID1s39
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NametRNA-guanine transglycosylase
Ligand NameAQO
EC.Number E.C.2.4.2.29
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)Ki=20nM
Release Year2004
Protein/NA SequenceCheck fasta file
Primary Reference HELV.CHIM.ACTAv87;pp.1333-1356
Ligand Properties
Formula C8H7N3O
Molecular Weight 161.161
Exact Mass 161.059
No. of atoms 19
No. of bonds 20
Polar Surface Area 71.77
LOGP Value 0.12      (Computed with XLOGP3)
1.09      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P28720  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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