Browse entries in the PDBbind-CN Database

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Related entries of code: 1y6r
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1jysRCSB PDB    PDBbind242aa, >1JYS_1|Chains... at 92%
1nc1RCSB PDB    PDBbind242aa, >1NC1_1|Chains... at 92%
1nc3RCSB PDB    PDBbind242aa, >1NC3_1|Chains... at 92%
1y6qRCSB PDB    PDBbind242aa, >1Y6Q_1|Chains... at 92%
4f2wRCSB PDB    PDBbind248aa, >4F2W_1|Chains... *
4f3cRCSB PDB    PDBbind248aa, >4F3C_1|Chains... at 100%
4f3kRCSB PDB    PDBbind248aa, >4F3K_1|Chains... at 100%
4wkcRCSB PDB    PDBbind245aa, >4WKC_1|Chain... at 90%
4ymlRCSB PDB    PDBbind245aa, >4YML_1|Chain... at 90%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1k27RCSB PDB    PDBbindMTM
Entry Information
PDB ID1y6r
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namemta/sah nucleosidase
Ligand NameMTM
EC.Number E.C.3.2.2.9
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Ki=77pM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v280 pp. 18274-82, 2005
Ligand Properties
Formula C12H18N5O2S
Molecular Weight 296.369
Exact Mass 296.118
No. of atoms 38
No. of bonds 40
Polar Surface Area 149.96
LOGP Value -1.27      (Computed with XLOGP3)
0.76      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AF12  
Entrez Gene IDNCBI Entrez Gene ID: 61754835  948542  
ASDInformation of known allosteric effects of PDB entries
 
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