Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1y8p
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1y8nRCSB PDB    PDBbind128aa, >1Y8N_2|Chain... *
1y8oRCSB PDB    PDBbind128aa, >1Y8O_2|Chain... at 100%
2q8iRCSB PDB    PDBbind128aa, >2Q8I_2|Chain... at 100%
3crkRCSB PDB    PDBbind87aa, >3CRK_2|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1b38RCSB PDB    PDBbindATP
1b39RCSB PDB    PDBbindATP
1gz3RCSB PDB    PDBbindATP
1gz4RCSB PDB    PDBbindATP
1m83RCSB PDB    PDBbindATP
1mauRCSB PDB    PDBbindATP
1mawRCSB PDB    PDBbindATP
1r0xRCSB PDB    PDBbindATP
1r10RCSB PDB    PDBbindATP
1vjcRCSB PDB    PDBbindATP
1vjdRCSB PDB    PDBbindATP
1xscRCSB PDB    PDBbindATP
1yidRCSB PDB    PDBbindATP
2cbzRCSB PDB    PDBbindATP
2e5yRCSB PDB    PDBbindATP
2fghRCSB PDB    PDBbindATP
2hmuRCSB PDB    PDBbindATP
2hmwRCSB PDB    PDBbindATP
2j9lRCSB PDB    PDBbindATP
2kmxRCSB PDB    PDBbindATP
2p09RCSB PDB    PDBbindATP
2p0xRCSB PDB    PDBbindATP
2pzeRCSB PDB    PDBbindATP
2vhqRCSB PDB    PDBbindATP
2vt3RCSB PDB    PDBbindATP
2w5gRCSB PDB    PDBbindATP
2w5iRCSB PDB    PDBbindATP
2xbpRCSB PDB    PDBbindATP
2ychRCSB PDB    PDBbindATP
3b2qRCSB PDB    PDBbindATP
3d2eRCSB PDB    PDBbindATP
3dglRCSB PDB    PDBbindATP
3dgoRCSB PDB    PDBbindATP
3dntRCSB PDB    PDBbindATP
3efsRCSB PDB    PDBbindATP
3lf0RCSB PDB    PDBbindATP
3ncqRCSB PDB    PDBbindATP
3qo3RCSB PDB    PDBbindATP
3qx9RCSB PDB    PDBbindATP
3qxcRCSB PDB    PDBbindATP
3ta0RCSB PDB    PDBbindATP
3umoRCSB PDB    PDBbindATP
3umpRCSB PDB    PDBbindATP
4futRCSB PDB    PDBbindATP
4fvqRCSB PDB    PDBbindATP
4fvrRCSB PDB    PDBbindATP
4jn4RCSB PDB    PDBbindATP
4jneRCSB PDB    PDBbindATP
4k8oRCSB PDB    PDBbindATP
4oznRCSB PDB    PDBbindATP
4uswRCSB PDB    PDBbindATP
4wz6RCSB PDB    PDBbindATP
4yb7RCSB PDB    PDBbindATP
5d6jRCSB PDB    PDBbindATP
5eouRCSB PDB    PDBbindATP
5f1cRCSB PDB    PDBbindATP
5f1xRCSB PDB    PDBbindATP
5ldkRCSB PDB    PDBbindATP
5ldpRCSB PDB    PDBbindATP
5svkRCSB PDB    PDBbindATP
5svlRCSB PDB    PDBbindATP
5tgcRCSB PDB    PDBbindATP
5v2lRCSB PDB    PDBbindATP
5wrsRCSB PDB    PDBbindATP
5x9hRCSB PDB    PDBbindATP
5z68RCSB PDB    PDBbindATP
6cvvRCSB PDB    PDBbindATP
6r4sRCSB PDB    PDBbindATP
6ntbRCSB PDB    PDBbindATP
6mm2RCSB PDB    PDBbindATP
6h78RCSB PDB    PDBbindATP
6h77RCSB PDB    PDBbindATP
6aecRCSB PDB    PDBbindATP
5xvuRCSB PDB    PDBbindATP
Entry Information
PDB ID1y8p
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namepyruvate dehydrogenase [lipoamide] kinase
Ligand NameATP
EC.Number E.C.2.3.1.12
Resolution 2.63(Å)
Affinity (Kd/Ki/IC50)Kd=0.84uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Embo J. v24 pp. 1763-74, 2005
Ligand Properties
Formula C10H19N5O13P3
Molecular Weight 510.205
Exact Mass 510.019
No. of atoms 50
No. of bonds 52
Polar Surface Area 329.38
LOGP Value -6.07      (Computed with XLOGP3)
-2.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q15120  P10515  
Entrez Gene IDNCBI Entrez Gene ID: 5165  1737  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com