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Related entries of code: 5ldk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ldmRCSB PDB    PDBbind177aa, >5LDM_1|Chains... at 100%
5ldoRCSB PDB    PDBbind177aa, >5LDO_1|Chains... at 100%
5ldpRCSB PDB    PDBbind177aa, >5LDP_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1b38RCSB PDB    PDBbindATP
1b39RCSB PDB    PDBbindATP
1gz3RCSB PDB    PDBbindATP
1gz4RCSB PDB    PDBbindATP
1m83RCSB PDB    PDBbindATP
1mauRCSB PDB    PDBbindATP
1mawRCSB PDB    PDBbindATP
1r0xRCSB PDB    PDBbindATP
1r10RCSB PDB    PDBbindATP
1vjcRCSB PDB    PDBbindATP
1vjdRCSB PDB    PDBbindATP
1xscRCSB PDB    PDBbindATP
1y8pRCSB PDB    PDBbindATP
1yidRCSB PDB    PDBbindATP
2cbzRCSB PDB    PDBbindATP
2e5yRCSB PDB    PDBbindATP
2fghRCSB PDB    PDBbindATP
2hmuRCSB PDB    PDBbindATP
2hmwRCSB PDB    PDBbindATP
2j9lRCSB PDB    PDBbindATP
2kmxRCSB PDB    PDBbindATP
2p09RCSB PDB    PDBbindATP
2p0xRCSB PDB    PDBbindATP
2pzeRCSB PDB    PDBbindATP
2vhqRCSB PDB    PDBbindATP
2vt3RCSB PDB    PDBbindATP
2w5gRCSB PDB    PDBbindATP
2w5iRCSB PDB    PDBbindATP
2xbpRCSB PDB    PDBbindATP
2ychRCSB PDB    PDBbindATP
3b2qRCSB PDB    PDBbindATP
3d2eRCSB PDB    PDBbindATP
3dglRCSB PDB    PDBbindATP
3dgoRCSB PDB    PDBbindATP
3dntRCSB PDB    PDBbindATP
3efsRCSB PDB    PDBbindATP
3lf0RCSB PDB    PDBbindATP
3ncqRCSB PDB    PDBbindATP
3qo3RCSB PDB    PDBbindATP
3qx9RCSB PDB    PDBbindATP
3qxcRCSB PDB    PDBbindATP
3ta0RCSB PDB    PDBbindATP
3umoRCSB PDB    PDBbindATP
3umpRCSB PDB    PDBbindATP
4futRCSB PDB    PDBbindATP
4fvqRCSB PDB    PDBbindATP
4fvrRCSB PDB    PDBbindATP
4jn4RCSB PDB    PDBbindATP
4jneRCSB PDB    PDBbindATP
4k8oRCSB PDB    PDBbindATP
4oznRCSB PDB    PDBbindATP
4uswRCSB PDB    PDBbindATP
4wz6RCSB PDB    PDBbindATP
4yb7RCSB PDB    PDBbindATP
5d6jRCSB PDB    PDBbindATP
5eouRCSB PDB    PDBbindATP
5f1cRCSB PDB    PDBbindATP
5f1xRCSB PDB    PDBbindATP
5ldpRCSB PDB    PDBbindATP
5svkRCSB PDB    PDBbindATP
5svlRCSB PDB    PDBbindATP
5tgcRCSB PDB    PDBbindATP
5v2lRCSB PDB    PDBbindATP
5wrsRCSB PDB    PDBbindATP
5x9hRCSB PDB    PDBbindATP
5z68RCSB PDB    PDBbindATP
6cvvRCSB PDB    PDBbindATP
6r4sRCSB PDB    PDBbindATP
6ntbRCSB PDB    PDBbindATP
6mm2RCSB PDB    PDBbindATP
6h78RCSB PDB    PDBbindATP
6h77RCSB PDB    PDBbindATP
6aecRCSB PDB    PDBbindATP
5xvuRCSB PDB    PDBbindATP
Entry Information
PDB ID5ldk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRNA 2',3'-cyclic phosphodiesterase
Ligand NameATP
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=67uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) PLoS ONE Vol. 12: pp. e0170355-e0170355
Ligand Properties
Formula C10H19N5O13P3
Molecular Weight 510.205
Exact Mass 510.019
No. of atoms 50
No. of bonds 52
Polar Surface Area 329.38
LOGP Value -6.07      (Computed with XLOGP3)
-2.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A140NFI1  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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