Browse entries in the PDBbind-CN Database

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Related entries of code: 1yms
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ylyRCSB PDB    PDBbind263aa, >1YLY_1|Chains... *
1ym1RCSB PDB    PDBbind263aa, >1YM1_1|Chains... at 100%
1ymxRCSB PDB    PDBbind263aa, >1YMX_1|Chains... at 100%
3g2yRCSB PDB    PDBbind263aa, >3G2Y_1|Chains... at 100%
3g2zRCSB PDB    PDBbind263aa, >3G2Z_1|Chains... at 100%
3g30RCSB PDB    PDBbind263aa, >3G30_1|Chain... at 100%
3g31RCSB PDB    PDBbind263aa, >3G31_1|Chains... at 100%
3g32RCSB PDB    PDBbind263aa, >3G32_1|Chains... at 100%
3g34RCSB PDB    PDBbind263aa, >3G34_1|Chains... at 100%
3g35RCSB PDB    PDBbind263aa, >3G35_1|Chains... at 100%
4ddsRCSB PDB    PDBbind263aa, >4DDS_1|Chains... at 99%
4ddyRCSB PDB    PDBbind263aa, >4DDY_1|Chains... at 99%
4de0RCSB PDB    PDBbind263aa, >4DE0_1|Chains... at 100%
4de1RCSB PDB    PDBbind263aa, >4DE1_1|Chains... at 100%
4de2RCSB PDB    PDBbind263aa, >4DE2_1|Chains... at 99%
4de3RCSB PDB    PDBbind263aa, >4DE3_1|Chains... at 99%
4lenRCSB PDB    PDBbind263aa, >4LEN_1|Chains... at 100%
5ujoRCSB PDB    PDBbind263aa, >5UJO_1|Chains... at 99%
6bt6RCSB PDB    PDBbind263aa, >6BT6_1|Chains... at 99%
6bu3RCSB PDB    PDBbind262aa, >6BU3_1|Chains... at 98%
6miaRCSB PDB    PDBbind263aa, >6MIA_1|Chains... at 99%
6md8RCSB PDB    PDBbind263aa, >6MD8_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ny0RCSB PDB    PDBbindNBF
Entry Information
PDB ID1yms
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namebeta-lactamase ctx-m-9
Ligand NameNBF
EC.Number E.C.3.5.2.6
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Ki=1.2uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference J.Am.Chem.Soc. v127 pp. 5423-34, 2005
Ligand Properties
Formula C14H16BNO4
Molecular Weight 273.092
Exact Mass 273.117
No. of atoms 36
No. of bonds 37
Polar Surface Area 78.79
LOGP Value 1.73      (Computed with XLOGP3)
1.79      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9L5C8  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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