Browse entries in the PDBbind-CN Database

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Related entries of code: 6md8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ylyRCSB PDB    PDBbind263aa, >1YLY_1|Chains... *
1ym1RCSB PDB    PDBbind263aa, >1YM1_1|Chains... at 100%
1ymsRCSB PDB    PDBbind263aa, >1YMS_1|Chains... at 100%
1ymxRCSB PDB    PDBbind263aa, >1YMX_1|Chains... at 100%
3g2yRCSB PDB    PDBbind263aa, >3G2Y_1|Chains... at 100%
3g2zRCSB PDB    PDBbind263aa, >3G2Z_1|Chains... at 100%
3g30RCSB PDB    PDBbind263aa, >3G30_1|Chain... at 100%
3g31RCSB PDB    PDBbind263aa, >3G31_1|Chains... at 100%
3g32RCSB PDB    PDBbind263aa, >3G32_1|Chains... at 100%
3g34RCSB PDB    PDBbind263aa, >3G34_1|Chains... at 100%
3g35RCSB PDB    PDBbind263aa, >3G35_1|Chains... at 100%
4ddsRCSB PDB    PDBbind263aa, >4DDS_1|Chains... at 99%
4ddyRCSB PDB    PDBbind263aa, >4DDY_1|Chains... at 99%
4de0RCSB PDB    PDBbind263aa, >4DE0_1|Chains... at 100%
4de1RCSB PDB    PDBbind263aa, >4DE1_1|Chains... at 100%
4de2RCSB PDB    PDBbind263aa, >4DE2_1|Chains... at 99%
4de3RCSB PDB    PDBbind263aa, >4DE3_1|Chains... at 99%
4lenRCSB PDB    PDBbind263aa, >4LEN_1|Chains... at 100%
5ujoRCSB PDB    PDBbind263aa, >5UJO_1|Chains... at 99%
6bt6RCSB PDB    PDBbind263aa, >6BT6_1|Chains... at 99%
6bu3RCSB PDB    PDBbind262aa, >6BU3_1|Chains... at 98%
6miaRCSB PDB    PDBbind263aa, >6MIA_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6m7iRCSB PDB    PDBbindJ84
Entry Information
PDB ID6md8
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBeta-lactamase CTX-M-14
Ligand NameJ84
EC.Number E.C.3.5.2.6
Resolution 1.4(Å)
Affinity (Kd/Ki/IC50)Ki=4200uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Acs Infect Dis. Vol. 5: pp. 1013-1021
Ligand Properties
Formula C10H7Cl2N7
Molecular Weight 296.115
Exact Mass 295.014
No. of atoms 26
No. of bonds 28
Polar Surface Area 98.3
LOGP Value 2.01      (Computed with XLOGP3)
2.52      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9L5C7  
Entrez Gene IDNCBI Entrez Gene ID: 59694559  
ASDInformation of known allosteric effects of PDB entries
 
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