Browse entries in the PDBbind-CN Database

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Related entries of code: 1yqy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pwpRCSB PDB    PDBbind776aa, >1PWP_1|Chains... *
1pwqRCSB PDB    PDBbind776aa, >1PWQ_1|Chains... at 100%
1pwuRCSB PDB    PDBbind776aa, >1PWU_1|Chains... at 99%
1zxvRCSB PDB    PDBbind776aa, >1ZXV_1|Chains... at 100%
4dv8RCSB PDB    PDBbind526aa, >4DV8_1|Chain... at 97%
4pkrRCSB PDB    PDBbind519aa, >4PKR_1|Chain... at 98%
4pksRCSB PDB    PDBbind519aa, >4PKS_1|Chain... at 98%
4pktRCSB PDB    PDBbind519aa, >4PKT_1|Chain... at 98%
4pkuRCSB PDB    PDBbind519aa, >4PKU_1|Chain... at 98%
4pkvRCSB PDB    PDBbind519aa, >4PKV_1|Chain... at 98%
4pkwRCSB PDB    PDBbind519aa, >4PKW_1|Chain... at 98%
4wf6RCSB PDB    PDBbind519aa, >4WF6_1|Chain... at 98%
4xm6RCSB PDB    PDBbind519aa, >4XM6_1|Chain... at 98%
4xm7RCSB PDB    PDBbind519aa, >4XM7_1|Chain... at 98%
4xm8RCSB PDB    PDBbind519aa, >4XM8_1|Chain... at 98%
5d1sRCSB PDB    PDBbind519aa, >5D1S_1|Chain... at 98%
5d1tRCSB PDB    PDBbind519aa, >5D1T_1|Chain... at 98%
5d1uRCSB PDB    PDBbind519aa, >5D1U_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID1yqy
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namelethal factor
Ligand Name915
EC.Number E.C.3.4.24.83
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Ki=24nM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Proc.Natl.Acad.Sci.USAv102;pp.7958-7963
Ligand Properties
Formula C14H19FN2O5S
Molecular Weight 346.374
Exact Mass 346.100
No. of atoms 42
No. of bonds 43
Polar Surface Area 113.11
LOGP Value 0.84      (Computed with XLOGP3)
2.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P15917  
Entrez Gene IDNCBI Entrez Gene ID: 45025515  
ASDInformation of known allosteric effects of PDB entries
 
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