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Related entries of code: 5d1t
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pwpRCSB PDB    PDBbind776aa, >1PWP_1|Chains... *
1pwqRCSB PDB    PDBbind776aa, >1PWQ_1|Chains... at 100%
1pwuRCSB PDB    PDBbind776aa, >1PWU_1|Chains... at 99%
1yqyRCSB PDB    PDBbind523aa, >1YQY_1|Chain... at 98%
1zxvRCSB PDB    PDBbind776aa, >1ZXV_1|Chains... at 100%
4dv8RCSB PDB    PDBbind526aa, >4DV8_1|Chain... at 97%
4pkrRCSB PDB    PDBbind519aa, >4PKR_1|Chain... at 98%
4pksRCSB PDB    PDBbind519aa, >4PKS_1|Chain... at 98%
4pktRCSB PDB    PDBbind519aa, >4PKT_1|Chain... at 98%
4pkuRCSB PDB    PDBbind519aa, >4PKU_1|Chain... at 98%
4pkvRCSB PDB    PDBbind519aa, >4PKV_1|Chain... at 98%
4pkwRCSB PDB    PDBbind519aa, >4PKW_1|Chain... at 98%
4wf6RCSB PDB    PDBbind519aa, >4WF6_1|Chain... at 98%
4xm6RCSB PDB    PDBbind519aa, >4XM6_1|Chain... at 98%
4xm7RCSB PDB    PDBbind519aa, >4XM7_1|Chain... at 98%
4xm8RCSB PDB    PDBbind519aa, >4XM8_1|Chain... at 98%
5d1sRCSB PDB    PDBbind519aa, >5D1S_1|Chain... at 98%
5d1uRCSB PDB    PDBbind519aa, >5D1U_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5d1t
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAnthrax toxin lethal factor
Ligand Name56R
EC.Number E.C.3.4.24.83
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)IC50=1.7uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 8723-8733
Ligand Properties
Formula C18H23FN3O4S
Molecular Weight 396.456
Exact Mass 396.139
No. of atoms 50
No. of bonds 51
Polar Surface Area 122.73
LOGP Value 1.14      (Computed with XLOGP3)
2.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P15917  
Entrez Gene IDNCBI Entrez Gene ID: 45025515  
ASDInformation of known allosteric effects of PDB entries
 
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