Browse entries in the PDBbind-CN Database

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Related entries of code: 2cbj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2j62RCSB PDB    PDBbind594aa, >2J62_1|Chains... at 99%
2vurRCSB PDB    PDBbind594aa, >2VUR_1|Chains... at 100%
2wb5RCSB PDB    PDBbind594aa, >2WB5_1|Chains... at 99%
2x0yRCSB PDB    PDBbind594aa, >2X0Y_1|Chains... at 100%
2xpkRCSB PDB    PDBbind594aa, >2XPK_1|Chains... at 99%
6rheRCSB PDB    PDBbind592aa, >6RHE_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2oxnRCSB PDB    PDBbindOAN
2vcbRCSB PDB    PDBbindOAN
2vvsRCSB PDB    PDBbindOAN
3ozpRCSB PDB    PDBbindOAN
3s6tRCSB PDB    PDBbindOAN
3sutRCSB PDB    PDBbindOAN
4az6RCSB PDB    PDBbindOAN
4azbRCSB PDB    PDBbindOAN
4azgRCSB PDB    PDBbindOAN
4aziRCSB PDB    PDBbindOAN
5a6bRCSB PDB    PDBbindOAN
5mi5RCSB PDB    PDBbindOAN
5mi7RCSB PDB    PDBbindOAN
Entry Information
PDB ID2cbj
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameCpNagJ
Ligand NameOAN
EC.Number E.C.3.2.1.35
Resolution 2.35(Å)
Affinity (Kd/Ki/IC50)Ki=5.4nM
Release Year2006
Protein/NA SequenceCheck fasta file
Primary Reference EMBO J. 2006, 25, 1569-1578.
Ligand Properties
Formula C15H19N3O7
Molecular Weight 353.327
Exact Mass 353.122
No. of atoms 44
No. of bonds 45
Polar Surface Area 149.71
LOGP Value -0.28      (Computed with XLOGP3)
-0.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q0TR53  
Entrez Gene IDNCBI Entrez Gene ID: 29571445  
ASDInformation of known allosteric effects of PDB entries
 
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