Browse entries in the PDBbind-CN Database

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Related entries of code: 2j4k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1xz8RCSB PDB    PDBbindU5P
2qafRCSB PDB    PDBbindU5P
2qcdRCSB PDB    PDBbindU5P
2qcnRCSB PDB    PDBbindU5P
2za3RCSB PDB    PDBbindU5P
3barRCSB PDB    PDBbindU5P
3dxgRCSB PDB    PDBbindU5P
3ex3RCSB PDB    PDBbindU5P
3ex6RCSB PDB    PDBbindU5P
3w07RCSB PDB    PDBbindU5P
4g0pRCSB PDB    PDBbindU5P
5km3RCSB PDB    PDBbindU5P
Entry Information
PDB ID2j4k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameURIDYLATE KINASE(residue 2-227)
Ligand NameU5P
EC.Number E.C.2.7.4.22
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=14uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference Biochemistry. 2007, 46, 2475-2757.
Ligand Properties
Formula C9H14N2O9P
Molecular Weight 325.189
Exact Mass 325.044
No. of atoms 35
No. of bonds 36
Polar Surface Area 188.06
LOGP Value -4.11      (Computed with XLOGP3)
-3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q97ZE2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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