Browse entries in the PDBbind-CN Database

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Related entries of code: 2qcd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2qcfRCSB PDB    PDBbind260aa, >2QCF_1|Chain... at 98%
2qcgRCSB PDB    PDBbind260aa, >2QCG_1|Chains... at 98%
2qchRCSB PDB    PDBbind260aa, >2QCH_1|Chains... at 98%
2qcmRCSB PDB    PDBbind260aa, >2QCM_1|Chain... at 98%
2qcnRCSB PDB    PDBbind260aa, >2QCN_1|Chains... at 98%
3ewuRCSB PDB    PDBbind260aa, >3EWU_1|Chains... at 98%
3ewzRCSB PDB    PDBbind260aa, >3EWZ_1|Chains... at 98%
3ex2RCSB PDB    PDBbind260aa, >3EX2_1|Chains... at 98%
3ex3RCSB PDB    PDBbind260aa, >3EX3_1|Chains... at 98%
3ex6RCSB PDB    PDBbind260aa, >3EX6_1|Chains... at 98%
3g3dRCSB PDB    PDBbind312aa, >3G3D_1|Chains... *
3g3mRCSB PDB    PDBbind279aa, >3G3M_1|Chain... at 92%
3l0kRCSB PDB    PDBbind260aa, >3L0K_1|Chains... at 98%
3l0nRCSB PDB    PDBbind260aa, >3L0N_1|Chains... at 98%
3mi2RCSB PDB    PDBbind279aa, >3MI2_1|Chains... at 92%
4hkpRCSB PDB    PDBbind312aa, >4HKP_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1xz8RCSB PDB    PDBbindU5P
2j4kRCSB PDB    PDBbindU5P
2qafRCSB PDB    PDBbindU5P
2qcnRCSB PDB    PDBbindU5P
2za3RCSB PDB    PDBbindU5P
3barRCSB PDB    PDBbindU5P
3dxgRCSB PDB    PDBbindU5P
3ex3RCSB PDB    PDBbindU5P
3ex6RCSB PDB    PDBbindU5P
3w07RCSB PDB    PDBbindU5P
4g0pRCSB PDB    PDBbindU5P
5km3RCSB PDB    PDBbindU5P
Entry Information
PDB ID2qcd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOMPD
Ligand NameU5P
EC.Number E.C.4.1.1.23
Resolution 2.03(Å)
Affinity (Kd/Ki/IC50)IC50=400uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Structure Vol. 16: pp. 82-92
Ligand Properties
Formula C9H14N2O9P
Molecular Weight 325.189
Exact Mass 325.044
No. of atoms 35
No. of bonds 36
Polar Surface Area 188.06
LOGP Value -4.11      (Computed with XLOGP3)
-3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11172  
Entrez Gene IDNCBI Entrez Gene ID: 7372  
ASDInformation of known allosteric effects of PDB entries
 
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