Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4hkp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2qcdRCSB PDB    PDBbind260aa, >2QCD_2|Chain... at 98%
2qcfRCSB PDB    PDBbind260aa, >2QCF_1|Chain... at 98%
2qcgRCSB PDB    PDBbind260aa, >2QCG_1|Chains... at 98%
2qchRCSB PDB    PDBbind260aa, >2QCH_1|Chains... at 98%
2qcmRCSB PDB    PDBbind260aa, >2QCM_1|Chain... at 98%
2qcnRCSB PDB    PDBbind260aa, >2QCN_1|Chains... at 98%
3ewuRCSB PDB    PDBbind260aa, >3EWU_1|Chains... at 98%
3ewzRCSB PDB    PDBbind260aa, >3EWZ_1|Chains... at 98%
3ex2RCSB PDB    PDBbind260aa, >3EX2_1|Chains... at 98%
3ex3RCSB PDB    PDBbind260aa, >3EX3_1|Chains... at 98%
3ex6RCSB PDB    PDBbind260aa, >3EX6_1|Chains... at 98%
3g3dRCSB PDB    PDBbind312aa, >3G3D_1|Chains... *
3g3mRCSB PDB    PDBbind279aa, >3G3M_1|Chain... at 92%
3l0kRCSB PDB    PDBbind260aa, >3L0K_1|Chains... at 98%
3l0nRCSB PDB    PDBbind260aa, >3L0N_1|Chains... at 98%
3mi2RCSB PDB    PDBbind279aa, >3MI2_1|Chains... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4hkp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameUridine 5'-monophosphate synthase
Ligand Name16B
EC.Number E.C.4.1.1.23
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)IC50=28.3uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Med.Chem. Vol. 55: pp. 9988-9997
Ligand Properties
Formula C9H15N3O9P
Molecular Weight 340.204
Exact Mass 340.055
No. of atoms 37
No. of bonds 38
Polar Surface Area 203.58
LOGP Value -3.86      (Computed with XLOGP3)
-3.24      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11172  
Entrez Gene IDNCBI Entrez Gene ID: 7372  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com