Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2lyb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1hvnRCSB PDB    PDBbind18aa, >1HVN_2|Chain... at 94%
1hvoRCSB PDB    PDBbind18aa, >1HVO_2|Chain... at 94%
2l4lRCSB PDB    PDBbind45aa, >2L4L_1|Chain... at 93%
2lyaRCSB PDB    PDBbind137aa, >2LYA_1|Chain... at 95%
2m3zRCSB PDB    PDBbind55aa, >2M3Z_1|Chain... at 100%
2r05RCSB PDB    PDBbind11aa, >2R05_2|Chain... at 100%
2xdeRCSB PDB    PDBbind145aa, >2XDE_1|Chains... at 93%
4inbRCSB PDB    PDBbind146aa, >4INB_1|Chain... at 100%
4j93RCSB PDB    PDBbind146aa, >4J93_1|Chain... at 100%
4jmuRCSB PDB    PDBbind112aa, >4JMU_1|Chain... at 99%
4qnbRCSB PDB    PDBbind231aa, >4QNB_1|Chain... at 98%
4u0eRCSB PDB    PDBbind231aa, >4U0E_1|Chain... at 98%
4u0fRCSB PDB    PDBbind231aa, >4U0F_1|Chain... at 98%
4xrqRCSB PDB    PDBbind231aa, >4XRQ_1|Chain... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2lyb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMatrix protein p17
Ligand Name8SP
EC.Number E.C.-.-.-.-
Resolution NMR
Affinity (Kd/Ki/IC50)Kd=35uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Proc.Natl.Acad.Sci.USA Vol. 110: pp. 3525-3530
Ligand Properties
Formula C22H44NO10P
Molecular Weight 513.559
Exact Mass 513.270
No. of atoms 78
No. of bonds 77
Polar Surface Area 190.05
LOGP Value 2.03      (Computed with XLOGP3)
2.55      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 23
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P12497  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com