Browse entries in the PDBbind-CN Database

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Related entries of code: 4j93
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1hvnRCSB PDB    PDBbind18aa, >1HVN_2|Chain... at 94%
1hvoRCSB PDB    PDBbind18aa, >1HVO_2|Chain... at 94%
2l4lRCSB PDB    PDBbind45aa, >2L4L_1|Chain... at 93%
2lyaRCSB PDB    PDBbind137aa, >2LYA_1|Chain... at 95%
2lybRCSB PDB    PDBbind137aa, >2LYB_1|Chain... at 95%
2m3zRCSB PDB    PDBbind55aa, >2M3Z_1|Chain... at 100%
2r05RCSB PDB    PDBbind11aa, >2R05_2|Chain... at 100%
2xdeRCSB PDB    PDBbind145aa, >2XDE_1|Chains... at 93%
4inbRCSB PDB    PDBbind146aa, >4INB_1|Chain... at 100%
4jmuRCSB PDB    PDBbind112aa, >4JMU_1|Chain... at 99%
4qnbRCSB PDB    PDBbind231aa, >4QNB_1|Chain... at 98%
4u0eRCSB PDB    PDBbind231aa, >4U0E_1|Chain... at 98%
4u0fRCSB PDB    PDBbind231aa, >4U0F_1|Chain... at 98%
4xrqRCSB PDB    PDBbind231aa, >4XRQ_1|Chain... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4j93
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGag protein
Ligand Name1JR
EC.Number E.C.-.-.-.-
Resolution 1.74(Å)
Affinity (Kd/Ki/IC50)Kd=20uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Antimicrob.Agents Chemother. Vol. 57: pp. 4622-4631
Ligand Properties
Formula C16H12N4O
Molecular Weight 276.293
Exact Mass 276.101
No. of atoms 33
No. of bonds 36
Polar Surface Area 70.67
LOGP Value 1.69      (Computed with XLOGP3)
2.63      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q79791  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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