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Related entries of code: 2oyl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2oykRCSB PDB    PDBbind481aa, >2OYK_1|Chains... *
2oymRCSB PDB    PDBbind481aa, >2OYM_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
8a3hRCSB PDB    PDBbindIDC

Entry Information
PDB ID2oyl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEndoglycoceramidase II
Ligand NameIDC
EC.Number E.C.3.2.1.123
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=0.5uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference Angew.Chem.Int.Ed.Engl. 46: 4474-4476
Ligand Properties
Formula C14H22N2O9
Molecular Weight 362.332
Exact Mass 362.133
No. of atoms 47
No. of bonds 49
Polar Surface Area 177.89
LOGP Value -4.57      (Computed with XLOGP3)
-3.99      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O33853  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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