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Related entries of code: 2oym
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2oykRCSB PDB    PDBbind481aa, >2OYK_1|Chains... *
2oylRCSB PDB    PDBbind481aa, >2OYL_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2oym
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameEndoglycoceramidase II
Ligand NameMNI
EC.Number E.C.3.2.1.123
Resolution 1.86(Å)
Affinity (Kd/Ki/IC50)Ki=10uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference Angew.Chem.Int.Ed.Engl. 46: 4474-4476
Ligand Properties
Formula C15H24N3O4
Molecular Weight 310.369
Exact Mass 310.177
No. of atoms 46
No. of bonds 47
Polar Surface Area 109.64
LOGP Value -0.02      (Computed with XLOGP3)
-0.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O33853  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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