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Related entries of code: 2pyy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ftjRCSB PDB    PDBbindGLU
1ii5RCSB PDB    PDBbindGLU
1s50RCSB PDB    PDBbindGLU
1xffRCSB PDB    PDBbindGLU
2a5sRCSB PDB    PDBbindGLU
2c6gRCSB PDB    PDBbindGLU
2i3vRCSB PDB    PDBbindGLU
2xxrRCSB PDB    PDBbindGLU
2xxwRCSB PDB    PDBbindGLU
2xxxRCSB PDB    PDBbindGLU
2znsRCSB PDB    PDBbindGLU
3dlnRCSB PDB    PDBbindGLU
3fasRCSB PDB    PDBbindGLU
3ff3RCSB PDB    PDBbindGLU
3fuzRCSB PDB    PDBbindGLU
3lmkRCSB PDB    PDBbindGLU
3s9eRCSB PDB    PDBbindGLU
3u93RCSB PDB    PDBbindGLU
4io2RCSB PDB    PDBbindGLU
4o3bRCSB PDB    PDBbindGLU
6h2tRCSB PDB    PDBbindGLU
Entry Information
PDB ID2pyy
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameIonotropic glutamate receptor bacterial homologue
Ligand NameGLU
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=25uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Mol.Biol. Vol. 376: pp. 308-316
Ligand Properties
Formula C5H10NO4
Molecular Weight 148.137
Exact Mass 148.061
No. of atoms 20
No. of bonds 19
Polar Surface Area 102.24
LOGP Value -1.18      (Computed with XLOGP3)
-1.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D0VWX9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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