Browse entries in the PDBbind-CN Database

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Related entries of code: 3s9e
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3u92RCSB PDB    PDBbind257aa, >3U92_1|Chains... at 99%
3u93RCSB PDB    PDBbind257aa, >3U93_1|Chains... at 99%
4e0wRCSB PDB    PDBbind258aa, >4E0W_1|Chain... at 100%
4g8nRCSB PDB    PDBbind258aa, >4G8N_1|Chain... at 100%
4igrRCSB PDB    PDBbind258aa, >4IGR_1|Chain... at 100%
4nwcRCSB PDB    PDBbind258aa, >4NWC_1|Chain... at 100%
4nwdRCSB PDB    PDBbind258aa, >4NWD_1|Chain... at 100%
5nf6RCSB PDB    PDBbind258aa, >5NF6_1|Chains... at 100%
5o4fRCSB PDB    PDBbind258aa, >5O4F_1|Chains... at 100%
6f28RCSB PDB    PDBbind258aa, >6F28_1|Chains... at 100%
6f29RCSB PDB    PDBbind258aa, >6F29_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ftjRCSB PDB    PDBbindGLU
1ii5RCSB PDB    PDBbindGLU
1s50RCSB PDB    PDBbindGLU
1xffRCSB PDB    PDBbindGLU
2a5sRCSB PDB    PDBbindGLU
2c6gRCSB PDB    PDBbindGLU
2i3vRCSB PDB    PDBbindGLU
2pyyRCSB PDB    PDBbindGLU
2xxrRCSB PDB    PDBbindGLU
2xxwRCSB PDB    PDBbindGLU
2xxxRCSB PDB    PDBbindGLU
2znsRCSB PDB    PDBbindGLU
3dlnRCSB PDB    PDBbindGLU
3fasRCSB PDB    PDBbindGLU
3ff3RCSB PDB    PDBbindGLU
3fuzRCSB PDB    PDBbindGLU
3lmkRCSB PDB    PDBbindGLU
3u93RCSB PDB    PDBbindGLU
4io2RCSB PDB    PDBbindGLU
4o3bRCSB PDB    PDBbindGLU
6h2tRCSB PDB    PDBbindGLU
Entry Information
PDB ID3s9e
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGlutamate receptor, ionotropic kainate 3
Ligand NameGLU
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Ki=7.43uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Struct.Biol. Vol. 176: pp. 307-314
Ligand Properties
Formula C5H10NO4
Molecular Weight 148.137
Exact Mass 148.061
No. of atoms 20
No. of bonds 19
Polar Surface Area 102.24
LOGP Value -1.18      (Computed with XLOGP3)
-1.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P42264  
Entrez Gene IDNCBI Entrez Gene ID: 298521  
ASDInformation of known allosteric effects of PDB entries
 
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