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Related entries of code: 2rka
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1m51RCSB PDB    PDBbind625aa, >1M51_1|Chain... *
1nhxRCSB PDB    PDBbind625aa, >1NHX_1|Chain... at 100%
2gmvRCSB PDB    PDBbind625aa, >2GMV_1|Chains... at 100%
2rk7RCSB PDB    PDBbind624aa, >2RK7_1|Chains... at 90%
2rk8RCSB PDB    PDBbind624aa, >2RK8_1|Chains... at 90%
2rkdRCSB PDB    PDBbind624aa, >2RKD_1|Chain... at 90%
2rkeRCSB PDB    PDBbind624aa, >2RKE_1|Chain... at 90%
3moeRCSB PDB    PDBbind624aa, >3MOE_1|Chain... at 90%
3mofRCSB PDB    PDBbind624aa, >3MOF_1|Chains... at 90%
3mohRCSB PDB    PDBbind624aa, >3MOH_1|Chains... at 90%
6p5oRCSB PDB    PDBbind622aa, >6P5O_1|Chain... at 90%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1amkRCSB PDB    PDBbindPGA
1aw1RCSB PDB    PDBbindPGA
1eghRCSB PDB    PDBbindPGA
1htiRCSB PDB    PDBbindPGA
1kv5RCSB PDB    PDBbindPGA
1lyxRCSB PDB    PDBbindPGA
1lzoRCSB PDB    PDBbindPGA
1ml1RCSB PDB    PDBbindPGA
1pdzRCSB PDB    PDBbindPGA
1s89RCSB PDB    PDBbindPGA
2j27RCSB PDB    PDBbindPGA
2v2cRCSB PDB    PDBbindPGA
2v2hRCSB PDB    PDBbindPGA
2ypiRCSB PDB    PDBbindPGA
3mohRCSB PDB    PDBbindPGA
4bi6RCSB PDB    PDBbindPGA
4bi7RCSB PDB    PDBbindPGA
Entry Information
PDB ID2rka
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePEPCK-Mn2+
Ligand NamePGA
EC.Number E.C.-.-.-.-
Resolution 1.95(Å)
Affinity (Kd/Ki/IC50)Ki=1mM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Biochemistry Vol. 47: pp. 2099-2109
Ligand Properties
Formula C2H6O6P
Molecular Weight 157.039
Exact Mass 156.990
No. of atoms 15
No. of bonds 14
Polar Surface Area 120.81
LOGP Value -1.24      (Computed with XLOGP3)
-1.26      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P07379  
Entrez Gene IDNCBI Entrez Gene ID: 362282  
ASDInformation of known allosteric effects of PDB entries
 
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