Browse entries in the PDBbind-CN Database

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Related entries of code: 6p5o
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1m51RCSB PDB    PDBbind625aa, >1M51_1|Chain... *
1nhxRCSB PDB    PDBbind625aa, >1NHX_1|Chain... at 100%
2gmvRCSB PDB    PDBbind625aa, >2GMV_1|Chains... at 100%
2rk7RCSB PDB    PDBbind624aa, >2RK7_1|Chains... at 90%
2rk8RCSB PDB    PDBbind624aa, >2RK8_1|Chains... at 90%
2rkaRCSB PDB    PDBbind624aa, >2RKA_1|Chains... at 90%
2rkdRCSB PDB    PDBbind624aa, >2RKD_1|Chain... at 90%
2rkeRCSB PDB    PDBbind624aa, >2RKE_1|Chain... at 90%
3moeRCSB PDB    PDBbind624aa, >3MOE_1|Chain... at 90%
3mofRCSB PDB    PDBbind624aa, >3MOF_1|Chains... at 90%
3mohRCSB PDB    PDBbind624aa, >3MOH_1|Chains... at 90%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6p5o
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namerat cytosolic PEPCK
Ligand NameO2Y
EC.Number E.C.4.1.1.32
Resolution 1.49(Å)
Affinity (Kd/Ki/IC50)Ki=28.6uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 3918-3926
Ligand Properties
Formula C8H7NO4S
Molecular Weight 213.210
Exact Mass 213.010
No. of atoms 21
No. of bonds 21
Polar Surface Area 112.79
LOGP Value 2.49      (Computed with XLOGP3)
0.96      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P07379  
Entrez Gene IDNCBI Entrez Gene ID: 362282  
ASDInformation of known allosteric effects of PDB entries
 
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